Output

Report of BAMixChecker

Sample mismatch check-up analysis report of BAMixChercker in .HTML.

Heatmap

Sample mismatch check-up analysis result of BAMixChercker in heatmap with .PDF.

TEXT files

• Mismatched_samples.txt:

  #Matched samples only by genotype or file name but not by both
  S1254_N.bam         S1254_T.bam            0.38                  Unmatched
  S1254_N.bam         S1345_T.bam            0.97                  Matched
  S1345_N.bam         S1254_T.bam            0.95                  Matched
  S1345_N.bam         S1345_T.bam            0.36                  Unmatched
  
  #Samples matched with nothing by genotype
  S1983_N.bam
      -> pair by name with S1983_T.bam (score : 0.37 )
  S1983_T.bam
      -> pair by name with S1983_N.bam (score : 0.37 )
  

• Matched_samples.txt:

  #Matched pair by genotype and name.
  S1023_N.bam         S1023_T.bam             0.92              Matched
  

• Total_result.txt:

  S1023_N.bam         S1023_T.bam             0.92            Matched
  S1023_N.bam         S1254_N.bam             0.37            Unmatched
  S1023_N.bam         S1254_T.bam             0.34            Unmatched
  S1023_N.bam         S1345_N.bam             0.34            Unmatched
  S1023_N.bam         S1345_T.bam             0.36            Unmatched
  S1023_N.bam         S1983_N.bam             0.36            Unmatched
  S1023_N.bam         S1983_T.bam             0.35            Unmatched
  S1023_T.bam         S1254_N.bam             0.35            Unmatched
  .....
  S1254_N.bam         S1254_T.bam             0.38            Unmatched
  S1254_N.bam         S1345_N.bam             0.37            Unmatched
  S1254_N.bam         S1345_T.bam             0.97            Matched
  .....