BAMixChecker

: An automated tool for sample matching checkup in NGS cohorts

BAMixChecker is a fast and easy-to-use sample matching checkup tool for NGS dataset.

It is simple and fast but accurately detects pairs of WGS, WES, RNA, targeted sequencing BAM/CRAM files originating from the same individual.

It informs the user about matched or mismatched sample at a glance.

Report of BAMixChecker in HTML file

Heatmap result of BAMixChecker in pdf file

BAMixChecker:

• Installation
  • Required tools
  • Installation with ‘git clone’
  • Installation with the compressed file
  • Set configeration
• Input
  • BAM files
    • RNA-seq BAM file
  • Reference sequence
  • SNP list for non-human organism
• Usage
  • Required arguments
  • Optional arguments
  • Usage for each data type
  • Tutorial
• Output
  • Report of BAMixChecker
  • Heatmap
  • TEXT files
• Issues
  • Running time of BAMixChecker
• Citation
• Contact